Bioinformatics: Ensembl API Workshop Prerequisites
This workshop is aimed at researchers and developers interested in exploring Ensembl beyond the website. The workshop covers the core, compara, variation and functional genomics (regulation) databases and APIs. Each database schema and API design will be presented in association with practical sessions in which the participants will write their own Perl scripts. Further information concerning course content is available. A course timetable is also available here.
Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.
- Our courses are open to all who might benefit
- Booking priority is given to people from Cambridge University and Collaborating Institutes
- Individual Course fees are required only from External participants not from Collaborating Institutes
- A good grasp of programming concepts
- Experience in coding in PERL
- Familiarity with basic Molecular Biology and Genetics
- Familiarity with the Ensembl would be advantageous
Number of sessions: 3
# | Date | Time | Venue | Trainers | |
---|---|---|---|---|---|
1 | Wed 4 Dec 2013 09:30 - 17:00 | 09:30 - 17:00 | Department of Genetics, Room G12 | map | Magali Ruffier, Giulietta Spudich, Sarah Hunt, Bert Overduin, Alessandro Vullo |
2 | Thu 5 Dec 2013 09:30 - 17:00 | 09:30 - 17:00 | Department of Genetics, Room G12 | map | Sarah Hunt, Giulietta Spudich, Bert Overduin, Thomas Juettemann |
3 | Fri 6 Dec 2013 09:30 - 17:00 | 09:30 - 17:00 | Department of Genetics, Room G12 | map | Giulietta Spudich, Matthieu Muffato , Bert Overduin, Stephen Fitzgerald |
- a.m.: Core Database & API - Magali Ruffier, Alessandro Vullo
- p.m.: Core Database & API - Magali Ruffier, Alessandro Vullo
- p.m.: Variation Database & API - Sarah Hunt
- a.m.: Variation Database & API - Sarah Hunt
- a.m.: Functional Genomics (Regulation) Database & API- Thomas Juettemann
- p.m.: Functional Genomics (Regulation) Database & API- Thomas Juettemann
- a.m.: Compara Database & API - Gene Trees - Matthieu Muffato
- p.m.: Compara Database & API - Alignments - Stephen Fitzgerald
- To enable those with some experience in both Molecular Biology and Programming to use the Ensembl APIs competently
Presentations and practicals
3
A number of times per year
Booking / availability