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Mon 18 Jan 2016
12:30 - 17:00

Venue: Room 215, Cancer Research UK Cambridge Institute, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE

Provided by: Bioinformatics


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CRUK: Image Analysis with Fiji
New

Mon 18 Jan 2016

Description

FIJI is a very popular image analysis software application, often described as a ‘batteries included’ distribution of ImageJ. This course aims to cover the basics of FIJI as well as enabling the novice user to make use of sophisticated plugins. Worked examples will be focussed on fluorescence microscopy and include image de-noising, spot detection and co-localisation analysis.

This event is part of a series of training courses organized in collaboration with Dr. Mark Dunning at CRUK Cambridge Institute.

Target audience
  • Recommended for all regular microscopy users
  • Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals
Prerequisites

No previous experience required

Sessions

Number of sessions: 1

# Date Time Venue Trainer
1 Mon 18 Jan 2016   12:30 - 17:00 12:30 - 17:00 Room 215, Cancer Research UK Cambridge Institute, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE map Jeremy Pike
Objectives

After this course you should be able to:

  • Perform routine image analysis with ImageJ/FIJI.
  • Find and use research level plugins.
  • Add scale bars and make panelled image figures.
Aims

During this course you will learn about:

  • Basic image manipulation with FIJI, including opening and saving microscopy file formats.
  • Image de-noising, spot detection and co-localisation analysis.
  • Installing and using specialist plugins.
  • Creating image based figures for publication.
Format

Presentations and practicals

Duration

0.5

Frequency

Once a year

Related courses
Theme
Specialized Training

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