EMBL-EBI: Network Analysis - Cytoscape and PSICQUIC Prerequisites
Mon 16 Mar 2015
Description
This session provides an introduction to Network Analysis using Cytoscape and PSICQUIC [from the European Bioinformatics Institute (EBI)]. It is aimed at biologists and computer scientists wanting to learn the basics of network analysis. Further information for this session is available here.
Please note that if you are not eligible for a University of Cambridge Raven account you will need to book by linking here.
Target audience
- Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals
- Further details regarding eligibility criteria are available here
- Further details regarding the charging policy are available here
Prerequisites
- Basic knowledge of interaction data resources and techniques is recommended
- No previous experience with Cytoscape or PSICQUIC is required
Sessions
Number of sessions: 2
| # | Date | Time | Venue | Trainer | |
|---|---|---|---|---|---|
| 1 | Mon 16 Mar 2015 09:30 - 12:30 | 09:30 - 12:30 | Bioinformatics Training Room, Craik-Marshall Building | map | Pablo Porras |
| 2 | Mon 16 Mar 2015 13:30 - 17:00 | 13:30 - 17:00 | Bioinformatics Training Room, Craik-Marshall Building | map | Pablo Porras |
Objectives
After this course you should be able to:
- Comprehend the basic principles of network analysis
- Use the PSICQUIC client to integrate public molecular interaction data
- Analyse and represent networks using Cytoscape
- Integrate external data
- Apply attribute-based filters
- Use plugins for clustering and GO enrichment
Aims
During this course you will learn about:
- Molecular Interaction Network Analysis
Format
Presentations, demonstrations and practicals
Duration
One full day session
Frequency
A number of times per year
Theme
Specialised Research Topics
Booking / availability